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Conferences

Author names

Abstract title

25th Conference of the Greek Society for
Biological Sciences, 2003, Lesvos

 Liakopoulos T. D., Bagos P. G., Alexopoulos I.
C., Hamodrakas S.J.

A web tool to select biological sequences from a
given set, with similarity/homology less than a user-defined level

26th Conference of the Greek Society for
Biological Sciences, 2004, Volos

Elefsinioti A. L., Bagos P. G., Hamodrakas S.J.

A Database of G-proteins and their interactions
with GPCRs

Hellenic Society of Biochemistry &
Molecular Biology Proceedings of the 57thMeeting Volume 52, Athens
2005

G. Spyrou, G. Archontis, V. Iconomidou, S.
Hamodrakas

Molecular dynamics simulation studies of
amyloid-fibril formation by peptide analogues of silkmoth chorion
proteins

6th Conference “Medicinal Chemistry: Drug
Discovery and Design”, March 10-12, 2005, Patras, Greece

Thiraiou T, Atzamoglou V, Hamodrakas SJ,
Eliopoulos E

Design of a modified lipokalinis with medical
interest

6th Conference “Medicinal Chemistry: Drug
Discovery and Design”, March 10-12, 2005, Patras, Greece

Atzamoglou V, Thiraiou T, Hamodrakas SJ,
Eliopoulos E

Determination of pharmacophore models for
dopamine receptor antagonists

ECML/PKDD 2006, Berlin, Germany, September
18-22

Sophia Kossida, Charikleia Falkou, Ioannis
Vasileiou, Christos Zervas

Towards an Integrated Bioinformatics System:
Using Integrins as Case Study to Dissect the Molecular Basis of
Cell Adhesion

Second International Conference on Algebraic
Biology, AB’07

I. Emiris, Sotirios I. Pantos.

Protein Structure Prediction using Residual
Dipolar Couplings

28th Conference of the Greek Society for
Biological Sciences, 2006, Ioannina

Liappa C.T., Iconomidou V. A., Hamodrakas S. J.

Conformational ‘switches’: the information
that triggers the misfolding of proteins that are related to
amyloidoses

28th Conference of the Greek Society for
Biological Sciences, 2006, Ioannina

Elefsinioti A.L., Bagos P.G., and S.J. Hamodrakas

A method for predicting the family and the
coupling specificity of G-proteins

28th Conference of the Greek Society for
Biological Sciences, 2006, Ioannina

Scorila E.D., Bagos P.G. and S.J. Hamodrakas

Linker identification in two-domain proteins
using a graph spectral method

28th Conference of the Greek Society for
Biological Sciences, 2006, Ioannina

Theodoropoulou M.C., Elefsinioti A.L., Bagos
P.G., and S.J. Hamodrakas

Studies of interactions between G-proteins and
their effectors

30th Conference of the Greek Society for
Biological Sciences, 2008, Thessaloniki

Tsaousis G.N., Bagos P.G., and S.J. Hamodrakas

Incorporation of experimental techniques for
topology prediction of transmembrane proteins

4th Conference of the Hellenic Crystallographic
Association, 2008, Athens.

Frousios, Κ.Κ., Iconomidou, V.A., Karletidi,
C-M. and Hamodrakas, S.J.

Amyloidogenic determinants do not hide.

30th Conference of the Greek Society for
Biological Sciences, 2008, Thessaloniki

Panousis N.J. and Hamodrakas S.J.

Computational studies of interactions between
α-helices in transmembranε proteins

30th Conference of the Greek Society for
Biological Sciences, 2008, Thessaloniki

Limitsiou, Ο.Κ., Tsirigos K.D., Bagos P. G.,
Hamodrakas S.J.

Comparative and statistical studies of genes
encoding β-barrels in Gram-negative bacteria

3rd Conference of the Hellenic Society for
Computational Biology and Bioinformatics, CERTH, Thessaloniki,
30-31 October 2008

Theodoropoulou M.C., Bagos P.G., Spyropoulos I.
and Hamodrakas S.J.

gpDB: a database of GPCRs, G proteins,
Effectors and their interactions (Best poster award)

3rd Conference of the Hellenic Society for
Computational Biology and Bioinformatics, CERTH, Thessaloniki,
30-31 October 2008

Tsaousis, G.N., Tsirigos K.D., Andrianou X.D.
Bagos, P.G. and Hamodrakas, S.J.

Transmembrane protein topology prediction
improves by 30% incorporating experimental information: a
literature survey and the ExTopoDB database.

31st Conference of the Greek Society for
Biological Sciences, 2009, Patras

Asimakis, I.D., Bagos, P.G. and Hamodrakas,
S.J.

Computational analysis of the protein families
of bacterial cytoskeleton using profile HMMs

3rd Conference of the Hellenic Society for
Computational Biology and Bioinformatics, CERTH, Thessaloniki,
30-31 October 2008

Kimon Frousios, Vassiliki Iconomidou and
Stavros J. Hamodrakas

AMYLPRED:A web tool for a consensus prediction
of amyloidogenic determinants in protein sequences.

32nd Conference of the Greek Society for
Biological Sciences, 2010, Karpenisi

Tsaousis, G.N., Bagos P.G. and Hamodrakas S.J.

A computational approach to the optimal placement
of a membrane protein topology reporter

32nd Conference of the Greek Society for
Biological Sciences, 2010, Karpenisi

Theodoropoulou, M.C., Litou, Z.I., Bagos P.G.,
Hamodrakas S.J.

Identifying G-proteins and GPCRs within the
proteomes of D. melanogaster, C. elegans and T. thermophila

5th Conference of the Hellenic Society for
Computational Biology and Bioinformatics, 2010, Alexandroupolis

Tsaousis, G.N., Tsirigos K.D., Andrianou, X.D.,
Liakopoulos, T.D., Bagos P.G. and Hamodrakas S.J.

ExTopoDB: A database of experimentally derived
topological models of transmembrane proteins.

5th Conference of the Hellenic Society for
Computational Biology and Bioinformatics, 2010, Alexandroupolis

Theodoropoulou, M.C., Bagos P.G., Hamodrakas S.J.

Effectors of G-protein signaling: a function based
categorization.

33rd Conference of the Greek Society for
Biological Sciences, 2011, Edessa

Kalntremtzhiou M.M., Theodoropoulou, M.C., Bagos
P.G., Hamodrakas S.J.

Studies of the interaction of GPCRs with proteins

33rd Conference of the Greek Society for
Biological Sciences, 2011, Edessa

Lavidas I.D., Theodoropoulou, M.C., Hamodrakas
S.J.

Computational studies on insects’ GPCRs and
G-proteins

33rd Conference of the Greek Society for
Biological Sciences, 2011, Edessa

Kostiou V.D., Theodoropoulou M.C. and Hamodrakas
S.J

Evolution of G-proteins

33rd Conference of the Greek Society for
Biological Sciences, 2011, Edessa

Katsimardos G.D. and Hamodrakas S.J.

Studies on metamorphic proteins

6th International Conference of the Hellenic
Crystallographic Association, 2012, Athens.

V. Kargas, N. Papandreou, P. Bagos, S.

Structural studies on the effect of nonsynonymoys
polymorphisms in human melanocortin-1 receptor involved in health
and disease.

35th Conference of the Greek Society for
Biological Sciences, 2013, Nafplion

Gypas F., Tsaousis G.N., Hamodrakas S.J.

mpMoRFsDB: A database of molecular recognition
features (MoRFs) in membrane proteins.

6th International Conference of the Hellenic
Crystallographic Association, 2012, Athens.

E. Lappa, N. Louros, P. Tsiolaki, E. D.
Chrysina,
V. Iconomidou, S. Hamodrakas

‘Hacking’ the code of a natural protective
amyloid: structural studies of a hexapeptide-analogue from the
central domain of silkmoth chorion proteins of the a family

35th Conference of the Greek Society for
Biological Sciences, 2013, Nafplion

Kyriakouli , K.G., Hamodrakas S.J.

Analysis of γ-turns in protein structures

35th Conference of the Greek Society for
Biological Sciences, 2013, Nafplion

Giannakouras T.E., Papandreou, Ν.C., Hamodrakas
S.J.

Computational studies of the interactions of
cuticular proteins, belonging to the tweedle family, with chitin

35th Conference of the Greek Society for
Biological Sciences, 2013, Nafplion

Grimanelli, V.P., Tsolis, A.C. and Hamodrakas,
S.J.

Improving the solubility of therapeutic monoclonal
antibodies against cancer

35th Conference of the Greek Society for
Biological Sciences, 2013, Nafplion

Ioannidou, Ζ.S., Theodoropoulou M.C., Papandreou,
Ν.C. , Hamodrakas S.J.

CutPFam-Pred: detection and classification of
structural cuticular
proteins from sequence alone, based on
pHMMs

12th European Conference on Computational Biology,
2013, Berlin, Germany.

Gypas F., Tsaousis G.N., Hamodrakas S.J.

mpMoRFsDB: A database of molecular recognition
features (MoRFs) in membrane proteins.

12th European Conference on Computational Biology,
2013, Berlin, Germany.

Theodoropoulou M.C., Tsaousis G.N., Litou Z.I.,
Iconomidou V.A., Bagos P.G., Hamodrakas S.J.

GPCRpipe: A pipeline for the detection of
G-protein coupled receptors in proteomes

Conference: Network Tools and Applications in
Biology (NETTAB) 2013, Italy

Bejleri O., Litou Z.I., Hamodrakas S.J.

SstmpDB: a database of single-spanning
transmembrane proteins

8th Conference of the Hellenic Society for
Computational Biology, 2013, Lamia

Nastou K.C., Tsaousis G.N., Kremizas K.E., Litou
Z.I., Hamodrakas S.J.

Visualization and analysis of the interactions of
human plasma membrane proteins: The Human plasma membrane
peripherome

8th Conference of the Hellenic Society for
Computational Biology, 2013, Lamia

Mantes A., Tsiolaki P.L., Tsaousis G.N.,
Papandreou N.C., Iconomidou V.A., Hamodrakas S.J.

Relations of ‘aggregation-prone’ peptides and
crystal contacts in crystallographically determined structures of
twelve (12) proteins related to amyloidoses

9th Conference of the Hellenic Society for
Computational Biology, 2014, Athens.

Theodoropoulou M.C., Kostiou K.D., Tsaousis G.N.,
Litou Z.I., Bagos P.G., Hamodrakas S.J.

Detecting GPCRs and G-proteins in Insect Proteomes

7th Conference of the Hellenic Society for
Computational Biology, 2012, Crete.

Apostolos Malatras and Ioannis Michalopoulos

MM: An algorithm for automated tree pruning

8th Conference of the Hellenic Society for
Computational Biology, 2013, Lamia

Dimoragka P, Malatras A, Poula D, Skourti E,
Michalopoulos I, Zoumpourlis V

microRNA microarray analysis of the multistage
mouse skin carcinogenesis model

Society for Free Radical Research Europe in
cooperation with the International Union of Biochemistry and
Molecular Biology (SFRR-E/IUBMB) Summer School

Filippopoulou K., Papaevgeniou N, Papadodima O,
Pilalis E, Hamodrakas S, Chatziioannou A, Chondrogianni N.

Bioinformatics analysis of gene expression
microarray data during ageing and the progression of Alzheimer’s
disease in the model-organism Caenorhabditis elegans

8th Conference of the Hellenic Society for
Computational Biology, 2013, Lamia

Apostolos Malatras and Ioannis Michalopoulos

Array Academy: A reprocessed Affymetrix GeneChip
microarray repository

9th Conference of the Hellenic Society for
Computational Biology, 2014, Athens.

Antonia Angelopoulou, Apostolos Malatras and
Ioannis Michalopoulos.

ACT II: A tool for gene coexpression analysis of
Arabidopsis thaliana.

65th annual conference of the Hellenic Society of
Biochemistry and Molecular Biology (HSBMB), 2014, Thessaloniki

Kazou M, Alexandraki V, Sarafianou A, Pot B,
Renault P, Tsakalidou E, Papadimitriou K.

Comparative genomic analysis among three dairy
Streptococcus macedonicus strains

9th Conference of the Hellenic Society for
Computational Biology, 2014, Athens.

Tsiolaki P.L., Mantes A.V., Louros N.N., Tsaousis
G.N., Papandreou N.C., Iconomidou V.A., Hamodrakas S.J.

A proposed model for fibril formation in
immunoglobulin light chain amyloidosis (AL) using information from
crystal contacts

9th Conference of the Hellenic Society for
Computational Biology, 2014, Athens.

Nastou K.C., Tsaousis G.N., Hamodrakas S.J.

A method for the prediction of membrane proteins
binding to lipids in proteomes using profile Hidden Markov Models

9th Conference of the Hellenic Society for
Computational Biology, 2014, Athens.

Baltoumas F.A., Theodoropoulou M.C., Hamodrakas
S.J.

Evaluating the Nature of Oligomeric Interactions
in G-protein coupled Receptors with Molecular Simulations

9th Conference of the Hellenic Society for
Computational Biology, 2014, Athens.

Kraniti S.K., Hamodrakas S.J.

A Consensus Method for Linear B-Cell Epitope
Prediction

9th Conference of the Hellenic Society for
Computational Biology, 2014, Athens.

Rerra A., Hamodrakas S.J.

Improving the solubility of therapeutic monoclonal
antibodies against autoimmune diseases

9th Conference of the Hellenic Society for
Computational Biology, 2014, Athens.

Papakonstantinou E, Eliopoulos E, Thiraiou T,
Sikara M, Vlachoyiannopoulos P

Designing novel candidate inhibitors against the
β2 Glycoprotein I (β2GPI) – CXCL4 chemokine complex formation by
using structure based rational ligand design

9th Conference of the Hellenic Society for
Computational Biology, 2014, Athens.

Minti F., Eliopoulos E.

Quantitative structure – activity relationship
(QSAR) in mosquito repellents

9th Conference of the Hellenic Society for
Computational Biology, 2014, Athens.

Filippopoulou K., Papaevgeniou N, Papadodima O,
Pilalis E, Hamodrakas S, Chatziioannou A, Chondrogianni N.

Βioinformatics analysis of a set of transcription
microarray data related to the ageing and Alzheimer’s disease
progression using Caenorhabditis elegans as a model system

9th Conference of the Hellenic Society for
Computational Biology, 2014, Athens.

Pyrousis I., Garavelou S., Hamodrakas S.J.,
Michalopoulos I.

Comparative and functional genomic annotation of
chorion protein genes of Lepidoptera

37th Conference of the Greek Society for
Biological Sciences, 2015, Volos

Tsiolaki P. L., Louros N. N., Nastou K.C.,
Baltoumas F. A., Iconomidou V. A., Hamodrakas S. J.

Proinsulin C-Peptide: an unknown parameter in
Diabetes

7th Conference of the Hellenic Society for
Computational Biology, 2012, Crete.

Andreas Desiniotis, Vassili N. Kouvelis, Milton A.
Typas, and Katherine M. Pappas, Karen Davenport, David Bruce,
Chris Detter, Roxanne Tapia, Cliff Han, Lynne Goodwin, Tanja
Woyke, Nikos C. Kyrpides

Analysis of the genome sequence of the
ethanol-producing Zymomonas mobilis subsp. mobilis centrotype ATCC
29191.

JGI Meeting 2013 San Francisco, California

Andreas Desiniotis, Vassili N. Kouvelis, Karen
Davenport, David Bruce, Chris Detter, Roxanne Tapia, Cliff Han,
Miriam L. Land, Loren Hauser, Yun-Juan Chang, Chrongle Pan, Lynne
A. Goodwin, Tanja Woyke, Nikos C. Kyrpides, Milton A. Typas,
Katherine M. Pappas

Genomic analysis of Zymomonas mobilis subsp.
mobilis ATCC 29191: comparative, structural and functional
insights.

Μικροβιόκοσμος 2013 Athens, Greece

Andreas Desiniotis, Vassili N. Kouvelis, Milton A.
Typas, and Katherine M. Pappas

Comparative genomic analysis of the
ethanol-producing Zymomonas mobilis subsp. mobilis centrotype ATCC
29191.

37th Symposium on Biotechnology for Fuels and
Chemicals 2015 San Diego, California

Andreas Desiniotis, Vassili N. Kouvelis, Milton A.
Typas, and Katherine M. Pappas

Comparative genomic analysis based on Zymomonas
mobilis subsp. mobilis ATCC 29191 leads to insights regarding
Zymomonas

10th Conference of the Hellenic Society for
Computational Biology, 2015, Athens.

Fotis Baltoumas, Margarita Theodoropoulou and
Stavros Hamodrakas

Exploring the effects of cholesterol upon a
G-protein coupled receptor heterodimer implicated in Parkinson’s
disease

10th Conference of the Hellenic Society for
Computational Biology, 2015, Athens.

Katerina Nastou, Georgios Tsaousis, Nikos
Papandreou and Stavros Hamodrakas

Prediction of Membrane Binding Proteins in
Eukaryotic Proteomes

10th Conference of the Hellenic Society for
Computational Biology, 2015, Athens.

Katerina Pantavou, Maria Syntichaki, Georgia
Braliou, Niki Dimou and Pantelis Bagos

TNXB genetic polymorphisms and Schizophrenia: A
meta-analysis

10th Conference of the Hellenic Society for
Computational Biology, 2015, Athens.

Marina Gavriilidou, Fotis Baltoumas, Margarita
Theodoropoulou and Stavros Hamodrakas

G-protein coupled receptors and heterotrimeric
G-proteins: evaluating different strategies in predicting
protein–protein interactions through sequence co-evolution

10th Conference of the Hellenic Society for
Computational Biology, 2015, Athens.

Konstantina Filippopoulou, Marianthi Logotheti,
Olga Papadodima, Eleutherios Pilalis, Aristotelis Chatziioannou
and Niki Chondrogianni

Comperative Meta-Analysis of Transcriptomics Data
during Ageing in the model-organism Caenorhabditis elegans

10th Conference of the Hellenic Society for
Computational Biology, 2015, Athens.

Theodora Tafarli, Zoe Cournia, Paraskevi
Gkeka, Brad Nolen, Plato Magriotis and Byron Hetrick

Lead optimization of ARP/3 inhibitors using free
energy perturbation calculations

10th Conference of the Hellenic Society for
Computational Biology, 2015, Athens.

Avgi Apostolakou, Katerina Nastou, Margarita
Theodoropoulou and Stavros Hamodrakas

Visualization and analysis of the interactions
between human G-protein coupled receptors and other proteins

10th Conference of the Hellenic Society for
Computational Biology, 2015, Athens.

Nikolaos Louros, Fotis Baltoumas, Stavros
Hamodrakas and Vassiliki Iconomidou

A β-Solenoid Model of the Pmel17 Repeat Domain:
Insights to the Formation of Functional Amyloid fibrils

10th Conference of the Hellenic Society for
Computational Biology, 2015, Athens.

Nikolaos Louros, Fotis Baltoumas, Paraskevi Tsiolaki, Nikolaos Papandreou, Athanasios Sillis, Vanja Radulovic, Mihajlo Dimitrijevic, Dubravka Vali, Vasileios Ioannidis, Stavros Hamodrakas and Vassiliki Iconomidou Assessing the Aggregation Dynamics of human Islet
Amyloid Polypeptide and its non-Amyloidogenic
Variants through Molecular Dynamics Simulations
Joint Conference of the Hellenic Crystallographic Association and the Hellenic Society for
Computational Biology and Bioinformatics (HECRA-HSCBB16)
Agricultural University of Athens, Athens, Greece, 07-09 October 2016
Eleftheria G. Karataraki, Katerina C. Nastou, Paraskevi L. Tsiolaki, Anna-Isavella G. Rerra, Vassiliki P. Grimanelli, Nikos C. Papandreou, Vassiliki A. Iconomidou, Stavros J. Hamodrakas ANTISOMA: Optimizing the aggregation propensity of monoclonal antibodies